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Sample GSM1194280 Query DataSets for GSM1194280
Status Public on Oct 08, 2016
Title SNB-75
Sample type genomic
 
Source name Central Nervous System
Organism Homo sapiens
Characteristics tissue: Central Nervous System
cell line: SNB-75
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
SNB-75.Detection Pval
SNB-75.Signal_A
SNB-75.Signal_B

Data table
ID_REF VALUE SNB-75.Detection Pval SNB-75.Signal_A SNB-75.Signal_B
cg00000029 0.7318912 0.00 541.3229 1750.702
cg00000108 0.9000334 0.00 619.8847 6481.37
cg00000109 0.9547976 0.00 24.75234 2635.108
cg00000165 0.5108763 0.00 1383.979 1549.975
cg00000236 0.9331248 0.00 96.85698 2746.791
cg00000289 0.5876801 0.00 464.9135 805.1719
cg00000292 0.7277565 0.00 2662.491 7384.642
cg00000321 0.8930771 0.00 670.4656 6435.338
cg00000363 0.7022454 0.00 3450.261 8373.185
cg00000622 0.003142389 0.00 17652.72 55.96181
cg00000658 0.8447942 0.00 1297.884 7608.762
cg00000714 0.1110305 0.00 23088.55 2896.204
cg00000721 0.944083 0.00 145.2855 4141.315
cg00000734 0.04810862 0.00 11755.21 599.1626
cg00000769 0.03860542 0.00 9108.178 369.7603
cg00000807 0.3651524 0.00 12631.23 7322.763
cg00000884 0.7194198 0.00 516.5706 1580.914
cg00000905 0.03546618 0.00 2239.549 86.02587
cg00000924 0.3302478 0.00 10118.33 5038.55
cg00000948 0.6700525 0.00 4956.925 10269.53

Total number of rows: 485577

Table truncated, full table size 20649 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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