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Sample GSM1194279 Query DataSets for GSM1194279
Status Public on Oct 08, 2016
Title A549_ATCC
Sample type genomic
 
Source name Lung
Organism Homo sapiens
Characteristics tissue: Lung
cell line: A549_ATCC
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
A549_ATCC.Detection Pval
A549_ATCC.Signal_A
A549_ATCC.Signal_B

Data table
ID_REF VALUE A549_ATCC.Detection Pval A549_ATCC.Signal_A A549_ATCC.Signal_B
cg00000029 0.5107872 0.00 1983.951 2175.854
cg00000108 0.953603 0.00 215.0176 6474.593
cg00000109 0.8692791 0.00 168.7061 1786.865
cg00000165 0.8748369 0.00 235.6924 2346.347
cg00000236 0.9255827 0.00 141.4154 3002.662
cg00000289 0.6887482 0.00 523.4851 1379.669
cg00000292 0.9067439 0.00 758.3505 8345.878
cg00000321 0.62697 0.00 2951.53 5128.858
cg00000363 0.7350211 0.00 2601.713 7494.241
cg00000622 0.006808902 0.00 15340.68 105.8548
cg00000658 0.8365586 0.00 1449.715 7932.06
cg00000714 0.289847 0.00 14775.84 6071.535
cg00000721 0.9275058 0.00 129.8375 2940.589
cg00000734 0.06835747 0.00 9104.341 675.3506
cg00000769 0.04940362 0.00 9518.638 499.8919
cg00000807 0.7622284 0.00 3563.503 11744.15
cg00000884 0.5386738 0.00 783.1602 1031.234
cg00000905 0.1138488 0.00 4679.94 614.1057
cg00000924 0.4094316 0.00 8612.281 6040.085
cg00000948 0.7708575 0.00 2719.146 9483.877

Total number of rows: 485577

Table truncated, full table size 20801 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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