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Sample GSM1194278 Query DataSets for GSM1194278
Status Public on Oct 08, 2016
Title 786-O
Sample type genomic
 
Source name Kidney
Organism Homo sapiens
Characteristics tissue: Kidney
cell line: 786-O
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
786-O.Detection Pval
786-O.Signal_A
786-O.Signal_B

Data table
ID_REF VALUE 786-O.Detection Pval 786-O.Signal_A 786-O.Signal_B
cg00000029 0.8983635 0.00 272.3634 3291.315
cg00000108 0.9587874 0.00 166.7732 6206.326
cg00000109 0.9351508 0.00 74.99861 2523.549
cg00000165 0.2045788 0.00 2063.448 556.4293
cg00000236 0.8645911 0.00 178.6151 1778.969
cg00000289 0.6938758 0.00 564.4632 1506.104
cg00000292 0.8761308 0.00 1122.019 8643.379
cg00000321 0.1515811 0.00 3303.886 608.1486
cg00000363 0.7943792 0.00 1866.084 7595.616
cg00000622 0.006454463 0.00 16913.17 110.5243
cg00000658 0.8527589 0.00 1262.148 7888.99
cg00000714 0.331519 0.00 14327.69 7155.109
cg00000721 0.9257846 0.00 181.5756 3512.459
cg00000734 0.07580151 0.00 11457.02 947.8915
cg00000769 0.04483476 0.00 9778.53 463.691
cg00000807 0.7937546 0.00 2949.616 11736.73
cg00000884 0.7977466 0.00 291.113 1542.664
cg00000905 0.1387475 0.00 2911.13 485.0922
cg00000924 0.3525963 0.00 8746.22 4817.928
cg00000948 0.8281493 0.00 2224.301 11200.81

Total number of rows: 485577

Table truncated, full table size 20821 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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