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Sample GSM1194274 Query DataSets for GSM1194274
Status Public on Oct 08, 2016
Title BT-549
Sample type genomic
 
Source name Breast
Organism Homo sapiens
Characteristics tissue: Breast
cell line: BT-549
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
BT-549.Detection Pval
BT-549.Signal_A
BT-549.Signal_B

Data table
ID_REF VALUE BT-549.Detection Pval BT-549.Signal_A BT-549.Signal_B
cg00000029 0.6415128 0.00 1135.637 2211.172
cg00000108 0.9369366 0.00 322.834 6282.071
cg00000109 0.9162636 0.00 154.8196 2788.299
cg00000165 0.7890929 0.00 831.2757 3484.297
cg00000236 0.9025269 0.00 484.6909 5413.796
cg00000289 0.5671737 0.00 821.5994 1207.66
cg00000292 0.8349537 0.00 1580.743 8502.718
cg00000321 0.6392312 0.00 4125.59 7487.147
cg00000363 0.7311755 0.00 3179.08 8918.767
cg00000622 0.01356331 0.00 14102.66 195.2838
cg00000658 0.867521 0.00 1384.58 9721.576
cg00000714 0.08593292 0.00 17446.23 1649.55
cg00000721 0.9437673 0.00 205.8397 5132.985
cg00000734 0.06991367 0.00 10373.79 787.3047
cg00000769 0.08233609 0.00 9087.598 824.3442
cg00000807 0.6627911 0.00 5341.276 10694.94
cg00000884 0.8438156 0.00 497.8857 3230.189
cg00000905 0.1211847 0.00 2348.684 337.6624
cg00000924 0.0459625 0.00 9215.284 448.7809
cg00000948 0.8864406 0.00 1243.835 10489.93

Total number of rows: 485577

Table truncated, full table size 20842 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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