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Sample GSM1194273 Query DataSets for GSM1194273
Status Public on Oct 08, 2016
Title SK-MEL-5
Sample type genomic
 
Source name Skin
Organism Homo sapiens
Characteristics tissue: Skin
cell line: SK-MEL-5
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
SK-MEL-5.Detection Pval
SK-MEL-5.Signal_A
SK-MEL-5.Signal_B

Data table
ID_REF VALUE SK-MEL-5.Detection Pval SK-MEL-5.Signal_A SK-MEL-5.Signal_B
cg00000029 0.3361863 0.00 2264.193 1197.338
cg00000108 0.8405669 0.00 1060.547 6118.666
cg00000109 0.8961194 0.00 210.0797 2674.884
cg00000165 0.8088698 0.00 457.71 2360.248
cg00000236 0.81438 0.00 857.5719 4201.203
cg00000289 0.6180308 0.00 560.2126 1068.232
cg00000292 0.8731132 0.00 1082.875 8139.413
cg00000321 0.7634475 0.00 2048.024 6932.511
cg00000363 0.9266332 0.00 604.8672 8902.572
cg00000622 0.01529397 0.00 15255.65 238.4963
cg00000658 0.8150656 0.00 1863.316 8652.967
cg00000714 0.2304318 0.00 15115.59 4556.005
cg00000721 0.9204926 0.00 306.4932 4706.151
cg00000734 0.07233674 0.00 10422.8 820.54
cg00000769 0.07126204 0.00 10020.53 776.5483
cg00000807 0.7296758 0.00 4547.668 12545.27
cg00000884 0.1495184 0.00 1434.023 269.688
cg00000905 0.08339241 0.00 2885.298 271.6006
cg00000924 0.5717154 0.00 6870.724 9305.191
cg00000948 0.8843951 0.00 1320.356 10865.94

Total number of rows: 485577

Table truncated, full table size 20845 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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