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Sample GSM1194271 Query DataSets for GSM1194271
Status Public on Oct 08, 2016
Title LOX_IMVI
Sample type genomic
 
Source name Skin
Organism Homo sapiens
Characteristics tissue: Skin
cell line: LOX_IMVI
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
LOX_IMVI.Detection Pval
LOX_IMVI.Signal_A
LOX_IMVI.Signal_B

Data table
ID_REF VALUE LOX_IMVI.Detection Pval LOX_IMVI.Signal_A LOX_IMVI.Signal_B
cg00000029 0.5117912 0.00 2055.172 2259.275
cg00000108 0.9501277 0.00 207.7736 5863.452
cg00000109 0.9186403 0.00 133.5016 2636.488
cg00000165 0.7584187 0.00 706.0541 2530.521
cg00000236 0.8850982 0.00 372.3002 3638.166
cg00000289 0.7226449 0.00 466.3153 1475.527
cg00000292 0.8877527 0.00 792.548 7059.068
cg00000321 0.5231092 0.00 4332.22 4861.773
cg00000363 0.9241179 0.00 479.4775 7057.069
cg00000622 0.006053755 0.00 14255.52 87.43413
cg00000658 0.8002815 0.00 1852.099 7822.157
cg00000714 0.3153005 0.00 13638.78 6326.637
cg00000721 0.3739933 0.00 2557.213 1587.491
cg00000734 0.07029592 0.00 10053.98 767.7537
cg00000769 0.08093061 0.00 8717.203 776.4175
cg00000807 0.8604903 0.00 1674.411 10944.49
cg00000884 0.8141477 0.00 328.113 1875.398
cg00000905 0.1080447 0.00 3234.123 403.8704
cg00000924 0.3920044 0.00 9599.892 6253.994
cg00000948 0.8664632 0.00 1308.691 9140.4

Total number of rows: 485577

Table truncated, full table size 20808 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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