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Sample GSM1194270 Query DataSets for GSM1194270
Status Public on Oct 08, 2016
Title DU-145
Sample type genomic
 
Source name Prostate
Organism Homo sapiens
Characteristics tissue: Prostate
cell line: DU-145
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
DU-145.Detection Pval
DU-145.Signal_A
DU-145.Signal_B

Data table
ID_REF VALUE DU-145.Detection Pval DU-145.Signal_A DU-145.Signal_B
cg00000029 0.512745 0.00 2284.392 2509.129
cg00000108 0.9692423 0.00 65.85226 5226.358
cg00000109 0.9098501 0.00 165.766 2682.281
cg00000165 0.9165671 0.00 161.2245 2869.731
cg00000236 0.8721601 0.00 306.5536 2773.624
cg00000289 0.6568425 0.00 653.9811 1443.206
cg00000292 0.7885846 0.00 1530.497 6081.797
cg00000321 0.7837457 0.00 1620.193 6234.299
cg00000363 0.6588456 0.00 3951.136 7823.652
cg00000622 0.0124682 0.00 14917.81 189.6091
cg00000658 0.815906 0.00 1889.279 8816.501
cg00000714 0.1849977 0.00 15534.32 3548.84
cg00000721 0.9340039 0.00 188.4737 4082.596
cg00000734 0.05883577 0.00 10102.65 637.8063
cg00000769 0.07696433 0.00 9606.81 809.3707
cg00000807 0.8879763 0.00 1489.624 12600.45
cg00000884 0.7584391 0.00 266.8152 1151.705
cg00000905 0.1139849 0.00 3863.711 509.9274
cg00000924 0.6208497 0.00 4655.074 7786.321
cg00000948 0.8623039 0.00 1563.424 10416.97

Total number of rows: 485577

Table truncated, full table size 20804 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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