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Sample GSM1194269 Query DataSets for GSM1194269
Status Public on Oct 08, 2016
Title SF-295
Sample type genomic
 
Source name Central Nervous System
Organism Homo sapiens
Characteristics tissue: Central Nervous System
cell line: SF-295
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
SF-295.Detection Pval
SF-295.Signal_A
SF-295.Signal_B

Data table
ID_REF VALUE SF-295.Detection Pval SF-295.Signal_A SF-295.Signal_B
cg00000029 0.7710838 0.00 769.1689 2927.719
cg00000108 0.9098707 0.00 492.4746 5981.136
cg00000109 0.8027706 0.00 425.3659 2138.365
cg00000165 0.5213107 0.00 1477.424 1717.874
cg00000236 0.9066317 0.00 259.1428 3487.375
cg00000289 0.613904 0.00 577.1348 1076.664
cg00000292 0.6553349 0.00 3734.341 7290.491
cg00000321 0.8356805 0.00 1005.598 5622.747
cg00000363 0.136809 0.00 6702.61 1078.161
cg00000622 0.01879845 0.00 12240.63 236.4291
cg00000658 0.8103733 0.00 1645.712 7460.333
cg00000714 0.2380873 0.00 14747.39 4639.607
cg00000721 0.9293261 0.00 188.9368 3799.375
cg00000734 0.07301207 0.00 10292.41 818.5342
cg00000769 0.07380435 0.00 7636.909 616.5194
cg00000807 0.6323605 0.00 5246.868 9196.913
cg00000884 0.1951557 0.00 1853.233 473.6126
cg00000905 0.1044225 0.00 3025.054 364.3749
cg00000924 0.3666046 0.00 8991.533 5262.113
cg00000948 0.6673905 0.00 4287.729 8804.106

Total number of rows: 485577

Table truncated, full table size 20853 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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