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Sample GSM1194268 Query DataSets for GSM1194268
Status Public on Oct 08, 2016
Title HOP-62
Sample type genomic
 
Source name Lung
Organism Homo sapiens
Characteristics tissue: Lung
cell line: HOP-62
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
HOP-62.Detection Pval
HOP-62.Signal_A
HOP-62.Signal_B

Data table
ID_REF VALUE HOP-62.Detection Pval HOP-62.Signal_A HOP-62.Signal_B
cg00000029 0.09822714 0.00 4330.578 482.6082
cg00000108 0.909944 0.00 543.5281 6502.336
cg00000109 0.8907448 0.00 224.7054 2647.285
cg00000165 0.7911018 0.00 430.5872 2009.345
cg00000236 0.9098803 0.00 261.1759 3646.558
cg00000289 0.6183289 0.00 587.0575 1113.072
cg00000292 0.9083275 0.00 532.9399 6271.415
cg00000321 0.3737722 0.00 5072.93 3087.53
cg00000363 0.3055708 0.00 7194.101 3209.635
cg00000622 0.01347772 0.00 14797.61 203.5289
cg00000658 0.8264651 0.00 1641.173 8292.389
cg00000714 0.2248596 0.00 14872.91 4343.474
cg00000721 0.8700426 0.00 456.4695 3725.47
cg00000734 0.07647845 0.00 10692.92 893.7805
cg00000769 0.06953419 0.00 9236.839 697.7468
cg00000807 0.6791723 0.00 4638.813 10031.77
cg00000884 0.6338749 0.00 943.5272 1806.666
cg00000905 0.09972879 0.00 3491.757 397.8818
cg00000924 0.4705864 0.00 7596.453 6841.242
cg00000948 0.7216735 0.00 3537.639 9432.042

Total number of rows: 485577

Table truncated, full table size 20849 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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