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Sample GSM1194265 Query DataSets for GSM1194265
Status Public on Oct 08, 2016
Title OVCAR-8
Sample type genomic
 
Source name Ovary
Organism Homo sapiens
Characteristics tissue: Ovary
cell line: OVCAR-8
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
OVCAR-8.Detection Pval
OVCAR-8.Signal_A
OVCAR-8.Signal_B

Data table
ID_REF VALUE OVCAR-8.Detection Pval OVCAR-8.Signal_A OVCAR-8.Signal_B
cg00000029 0.8532675 0.00 526.6121 3643.826
cg00000108 0.909049 0.00 638.9559 7385.819
cg00000109 0.9209085 0.00 103.7621 2372.521
cg00000165 0.9215758 0.00 306.6052 4778.087
cg00000236 0.9177185 0.00 371.359 5257.257
cg00000289 0.6788434 0.00 767.6833 1834.063
cg00000292 0.9135789 0.00 727.1147 8743.628
cg00000321 0.8257071 0.00 1385.575 7037.862
cg00000363 0.8706715 0.00 1238.904 9013.829
cg00000622 0.01298952 0.00 15135.22 200.5027
cg00000658 0.8205358 0.00 1783.459 8611.443
cg00000714 0.1156118 0.00 17253.37 2268.522
cg00000721 0.9322457 0.00 305.8251 5583.831
cg00000734 0.0778688 0.00 11548.02 983.6096
cg00000769 0.09891871 0.00 9205.303 1021.515
cg00000807 0.9083795 0.00 1142.163 12315.53
cg00000884 0.9005601 0.00 200.5027 2721.449
cg00000905 0.1871253 0.00 2669.728 637.5967
cg00000924 0.0513857 0.00 10916.86 596.775
cg00000948 0.8846052 0.00 1248.266 10335.68

Total number of rows: 485577

Table truncated, full table size 20828 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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