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Sample GSM1194264 Query DataSets for GSM1194264
Status Public on Oct 08, 2016
Title U031
Sample type genomic
 
Source name Kidney
Organism Homo sapiens
Characteristics tissue: Kidney
cell line: U031
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
U031.Detection Pval
U031.Signal_A
U031.Signal_B

Data table
ID_REF VALUE U031.Detection Pval U031.Signal_A U031.Signal_B
cg00000029 0.3934479 0.00 2909.678 1952.267
cg00000108 0.9303902 0.00 489.7943 7883.072
cg00000109 0.938783 0.00 93.83033 2972.45
cg00000165 0.6720712 0.00 895.1413 2039.485
cg00000236 0.902501 0.00 177.3393 2567.196
cg00000289 0.5360056 0.00 806.0025 1046.613
cg00000292 0.9141982 0.00 764.7172 9213.363
cg00000321 0.8356 0.00 1082.802 6011.856
cg00000363 0.9000185 0.00 929.8585 9270.627
cg00000622 0.007783043 0.00 18560.58 146.3753
cg00000658 0.8348982 0.00 1446.864 7822.284
cg00000714 0.1395515 0.00 19080.4 3110.765
cg00000721 0.9622303 0.00 36.59383 3479.899
cg00000734 0.04854042 0.00 11763.51 605.2381
cg00000769 0.0710674 0.00 11311.87 873.0582
cg00000807 0.8966689 0.00 1348.342 12568.16
cg00000884 0.8437705 0.00 405.347 2729.298
cg00000905 0.06056752 0.00 3384.46 224.6517
cg00000924 0.07186251 0.00 10743.57 839.5807
cg00000948 0.9156138 0.00 916.7223 11031.72

Total number of rows: 485577

Table truncated, full table size 20784 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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