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Sample GSM1194262 Query DataSets for GSM1194262
Status Public on Oct 08, 2016
Title MCF7
Sample type genomic
 
Source name Breast
Organism Homo sapiens
Characteristics tissue: Breast
cell line: MCF7
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
MCF7.Detection Pval
MCF7.Signal_A
MCF7.Signal_B

Data table
ID_REF VALUE MCF7.Detection Pval MCF7.Signal_A MCF7.Signal_B
cg00000029 0.03869181 0.00 3288.043 136.3658
cg00000108 0.9315474 0.00 364.6075 6322.679
cg00000109 0.8946134 0.00 227.2403 2777.902
cg00000165 0.9034916 0.00 139.5592 2242.703
cg00000236 0.8626847 0.00 198.7439 1876.862
cg00000289 0.6603667 0.00 577.9649 1318.202
cg00000292 0.8704219 0.00 1010.525 7459.793
cg00000321 0.7917693 0.00 1147.892 4744.941
cg00000363 0.8203592 0.00 1284.529 6322.679
cg00000622 0.02100077 0.00 13797.36 298.1159
cg00000658 0.8128269 0.00 1551.956 7173.865
cg00000714 0.1444745 0.00 15542.21 2641.537
cg00000721 0.9321117 0.00 209.7041 4252.265
cg00000734 0.05648857 0.00 10333.22 624.6431
cg00000769 0.06993888 0.00 8577.112 652.5028
cg00000807 0.8738591 0.00 1518.345 11211.32
cg00000884 0.8141666 0.00 473.4782 2512.502
cg00000905 0.08999236 0.00 2072.198 214.8127
cg00000924 0.04923084 0.00 9825.403 513.9376
cg00000948 0.7293851 0.00 3193.786 8877.703

Total number of rows: 485577

Table truncated, full table size 20780 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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