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Sample GSM1194261 Query DataSets for GSM1194261
Status Public on Oct 08, 2016
Title RPMI-8226
Sample type genomic
 
Source name Haematopoietic and Lymphoid Tissue
Organism Homo sapiens
Characteristics tissue: Haematopoietic and Lymphoid Tissue
cell line: RPMI-8226
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
RPMI-8226.Detection Pval
RPMI-8226.Signal_A
RPMI-8226.Signal_B

Data table
ID_REF VALUE RPMI-8226.Detection Pval RPMI-8226.Signal_A RPMI-8226.Signal_B
cg00000029 0.8681565 0.00 415.3234 3393.275
cg00000108 0.8802223 0.00 710.0168 5952.65
cg00000109 0.7959807 0.00 726.2087 3223.451
cg00000165 0.1447156 0.00 1656.436 297.192
cg00000236 0.8330854 0.00 364.3188 2317.456
cg00000289 0.2974249 0.00 1109.148 511.8751
cg00000292 0.8784255 0.00 1231.397 9619.887
cg00000321 0.05418921 0.00 4695.664 274.7624
cg00000363 0.1371341 0.00 8574.444 1378.618
cg00000622 0.01203765 0.00 12258.92 150.5851
cg00000658 0.8029484 0.00 1747.92 7529.931
cg00000714 0.1123719 0.00 15674.61 1997.034
cg00000721 0.9163636 0.00 344.8884 4874.429
cg00000734 0.06612813 0.00 10647.01 761.0037
cg00000769 0.0540158 0.00 8289.332 479.0318
cg00000807 0.2778849 0.00 12033.85 4669.358
cg00000884 0.06857608 0.00 1771.399 137.7817
cg00000905 0.07190654 0.00 4387.208 347.6585
cg00000924 0.770423 0.00 2445.793 8543.268
cg00000948 0.4126978 0.00 8338.042 5929.42

Total number of rows: 485577

Table truncated, full table size 20896 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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