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Sample GSM1194260 Query DataSets for GSM1194260
Status Public on Oct 08, 2016
Title SK-MEL-2
Sample type genomic
 
Source name Skin
Organism Homo sapiens
Characteristics tissue: Skin
cell line: SK-MEL-2
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
SK-MEL-2.Detection Pval
SK-MEL-2.Signal_A
SK-MEL-2.Signal_B

Data table
ID_REF VALUE SK-MEL-2.Detection Pval SK-MEL-2.Signal_A SK-MEL-2.Signal_B
cg00000029 0.801586 0.00 478.6797 2337.847
cg00000108 0.947084 0.00 238.1947 6052.969
cg00000109 0.9201919 0.00 52.67767 1760.384
cg00000165 0.7700969 0.00 521.0509 2080.308
cg00000236 0.9101381 0.00 136.2749 2393.034
cg00000289 0.713447 0.00 348.1307 1115.736
cg00000292 0.7235076 0.00 3291.209 8873.902
cg00000321 0.3987744 0.00 4048.165 2751.35
cg00000363 0.9121857 0.00 809.6329 9448.967
cg00000622 0.00 0.00 23854.97 0.00
cg00000658 0.8918031 0.00 833.6815 7695.781
cg00000714 0.1101165 0.00 24215.7 3008.889
cg00000721 0.9460229 0.00 142.0007 4241.397
cg00000734 0.04364796 0.00 12938.09 595.0593
cg00000769 0.01641957 0.00 10248.78 172.7592
cg00000807 0.8584176 0.00 2229.64 14124.66
cg00000884 0.8262043 0.00 351.5662 2146.693
cg00000905 0.05716062 0.00 3053.015 191.1548
cg00000924 0.5326092 0.00 8089.458 9332.194
cg00000948 0.8764007 0.00 1513.911 11443.7

Total number of rows: 485577

Table truncated, full table size 20732 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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