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Sample GSM1194259 Query DataSets for GSM1194259
Status Public on Oct 08, 2016
Title NCI-H522
Sample type genomic
 
Source name Lung
Organism Homo sapiens
Characteristics tissue: Lung
cell line: NCI-H522
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
NCI-H522.Detection Pval
NCI-H522.Signal_A
NCI-H522.Signal_B

Data table
ID_REF VALUE NCI-H522.Detection Pval NCI-H522.Signal_A NCI-H522.Signal_B
cg00000029 0.7938137 0.00 599.2803 2692.218
cg00000108 0.9394845 0.00 212.6479 4853.758
cg00000109 0.9474489 0.00 67.27405 3015.802
cg00000165 0.9070761 0.00 269.8695 3610.477
cg00000236 0.8826649 0.00 231.9795 2497.348
cg00000289 0.656856 0.00 473.2382 1097.309
cg00000292 0.7110946 0.00 2557.96 6542.146
cg00000321 0.5717381 0.00 2980.937 4113.11
cg00000363 0.5867164 0.00 5025.449 7276.323
cg00000622 0.01254802 0.00 15538.76 198.7291
cg00000658 0.8393273 0.00 1207.84 6831.934
cg00000714 0.2671879 0.00 14368.04 5275.136
cg00000721 0.8038244 0.00 1355.533 5964.01
cg00000734 0.07533647 0.00 9678.957 796.7354
cg00000769 0.06457765 0.00 8316.105 581.0128
cg00000807 0.8804651 0.00 1527.198 11985.55
cg00000884 0.8715056 0.00 302.3466 2728.891
cg00000905 0.0848799 0.00 3001.041 287.6301
cg00000924 0.5650072 0.00 5855.162 7735.092
cg00000948 0.890931 0.00 1038.495 9299.8

Total number of rows: 485577

Table truncated, full table size 20804 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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