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Sample GSM1194258 Query DataSets for GSM1194258
Status Public on Oct 08, 2016
Title SNB-19
Sample type genomic
 
Source name Central Nervous System
Organism Homo sapiens
Characteristics tissue: Central Nervous System
cell line: SNB-19
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
SNB-19.Detection Pval
SNB-19.Signal_A
SNB-19.Signal_B

Data table
ID_REF VALUE SNB-19.Detection Pval SNB-19.Signal_A SNB-19.Signal_B
cg00000029 0.5349008 0.00 2555.304 3053.81
cg00000108 0.9171023 0.00 508.225 6728.835
cg00000109 0.9197143 0.00 100.7494 2299.69
cg00000165 0.8591169 0.00 417.9236 3158.341
cg00000236 0.8974675 0.00 182.0953 2469.181
cg00000289 0.5442514 0.00 670.9167 920.6229
cg00000292 0.8797154 0.00 797.7864 6566.064
cg00000321 0.7884691 0.00 1224.666 4937.615
cg00000363 0.8954931 0.00 974.6576 9208.469
cg00000622 0.007995462 0.00 14251.94 115.6753
cg00000658 0.8254667 0.00 1451.538 7338.104
cg00000714 0.1711558 0.00 15643.03 3250.926
cg00000721 0.9442314 0.00 132.0937 3929.634
cg00000734 0.07626082 0.00 10029.42 836.2511
cg00000769 0.06841198 0.00 7606.898 565.9628
cg00000807 0.8089753 0.00 2515.005 11074.35
cg00000884 0.5187673 0.00 1566.467 1796.447
cg00000905 0.1105642 0.00 3497.872 447.245
cg00000924 0.05155952 0.00 9624.185 528.6302
cg00000948 0.786737 0.00 2231.414 8600.693

Total number of rows: 485577

Table truncated, full table size 20824 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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