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Sample GSM1194256 Query DataSets for GSM1194256
Status Public on Oct 08, 2016
Title IGR-OV1
Sample type genomic
 
Source name Ovary
Organism Homo sapiens
Characteristics tissue: Ovary
cell line: IGR-OV1
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
IGR-OV1.Detection Pval
IGR-OV1.Signal_A
IGR-OV1.Signal_B

Data table
ID_REF VALUE IGR-OV1.Detection Pval IGR-OV1.Signal_A IGR-OV1.Signal_B
cg00000029 0.5596566 0.00 1552.953 2100.828
cg00000108 0.9123904 0.00 397.9712 5186.009
cg00000109 0.9065377 0.00 104.6837 1985.331
cg00000165 0.8755655 0.00 368.5559 3296.926
cg00000236 0.8674569 0.00 345.1967 2913.685
cg00000289 0.5556669 0.00 717.2133 1021.977
cg00000292 0.8414341 0.00 1333.203 7605.33
cg00000321 0.7729827 0.00 1594.48 5769.621
cg00000363 0.1731344 0.00 8616.941 1825.209
cg00000622 0.01181021 0.00 15463.78 186.0083
cg00000658 0.8017757 0.00 1742.422 7452.208
cg00000714 0.1575887 0.00 16401.6 3086.931
cg00000721 0.9466309 0.00 109.0095 3707.292
cg00000734 0.07079524 0.00 10098.09 776.9827
cg00000769 0.07391722 0.00 8428.687 680.7348
cg00000807 0.7808021 0.00 3090.333 11364.25
cg00000884 0.7573393 0.00 768.2574 2709.814
cg00000905 0.05623149 0.00 3556.651 217.8701
cg00000924 0.4575716 0.00 7933.469 6776.724
cg00000948 0.8219118 0.00 1905.071 9253.793

Total number of rows: 485577

Table truncated, full table size 20805 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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