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Sample GSM1194255 Query DataSets for GSM1194255
Status Public on Oct 08, 2016
Title TK10
Sample type genomic
 
Source name Kidney
Organism Homo sapiens
Characteristics tissue: Kidney
cell line: TK10
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
TK10.Detection Pval
TK10.Signal_A
TK10.Signal_B

Data table
ID_REF VALUE TK10.Detection Pval TK10.Signal_A TK10.Signal_B
cg00000029 0.8378142 0.00 265.1537 1886.299
cg00000108 0.9567164 0.00 147.9928 5481.484
cg00000109 0.8684033 0.00 215.8228 2084.106
cg00000165 0.8256867 0.00 439.5738 2555.851
cg00000236 0.8550372 0.00 439.5738 3182.578
cg00000289 0.5653586 0.00 446.621 711.0159
cg00000292 0.9262415 0.00 570.8292 8424.111
cg00000321 0.8005063 0.00 1296.698 5604.519
cg00000363 0.07778677 0.00 9490.036 808.8995
cg00000622 0.01872104 0.00 17168.92 329.4601
cg00000658 0.8166853 0.00 1464.071 6968.092
cg00000714 0.1418167 0.00 18648.85 3098.289
cg00000721 0.9551734 0.00 67.83002 3576.152
cg00000734 0.05828175 0.00 10092.58 630.8057
cg00000769 0.03685793 0.00 9527.342 368.4232
cg00000807 0.8836116 0.00 1429.716 11613.49
cg00000884 0.8689682 0.00 311.8419 2731.226
cg00000905 0.1064397 0.00 2222.534 276.6573
cg00000924 0.03664145 0.00 11302.07 433.6789
cg00000948 0.8878087 0.00 1204.203 10320.61

Total number of rows: 485577

Table truncated, full table size 20680 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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