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Sample GSM1194254 Query DataSets for GSM1194254
Status Public on Oct 08, 2016
Title MDA-MB-435
Sample type genomic
 
Source name Skin
Organism Homo sapiens
Characteristics tissue: Skin
cell line: MDA-MB-435
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
MDA-MB-435.Detection Pval
MDA-MB-435.Signal_A
MDA-MB-435.Signal_B

Data table
ID_REF VALUE MDA-MB-435.Detection Pval MDA-MB-435.Signal_A MDA-MB-435.Signal_B
cg00000029 0.844909 0.00 278.1442 2060.064
cg00000108 0.875607 0.00 562.9108 4666.255
cg00000109 0.9259059 0.00 187.9129 3597.859
cg00000165 0.8481571 0.00 355.9583 2546.872
cg00000236 0.8904826 0.00 265.727 2973.714
cg00000289 0.6163602 0.00 354.3027 729.8882
cg00000292 0.8098028 0.00 1643.203 7422.035
cg00000321 0.8257437 0.00 1205.291 6185.352
cg00000363 0.9053954 0.00 630.7912 6993.902
cg00000622 0.005698928 0.00 13620.79 78.64195
cg00000658 0.8534315 0.00 1038.901 6631.538
cg00000714 0.2002903 0.00 14484.19 3652.665
cg00000721 0.9528071 0.00 96.85377 3974.409
cg00000734 0.07401124 0.00 11395.63 918.808
cg00000769 0.07483868 0.00 7783.11 637.6851
cg00000807 0.2853663 0.00 12220.13 4919.653
cg00000884 0.6567202 0.00 768.2076 1660.947
cg00000905 0.1019881 0.00 4833.583 560.3117
cg00000924 0.4507535 0.00 7110.06 5917.124
cg00000948 0.8595154 0.00 1329.463 8745.764

Total number of rows: 485577

Table truncated, full table size 20705 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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