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Sample GSM1194251 Query DataSets for GSM1194251
Status Public on Oct 08, 2016
Title NCI-H322M
Sample type genomic
 
Source name Lung
Organism Homo sapiens
Characteristics tissue: Lung
cell line: NCI-H322M
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
NCI-H322M.Detection Pval
NCI-H322M.Signal_A
NCI-H322M.Signal_B

Data table
ID_REF VALUE NCI-H322M.Detection Pval NCI-H322M.Signal_A NCI-H322M.Signal_B
cg00000029 0.3739451 0.00 2962.187 1829.056
cg00000108 0.9603438 0.00 107.1279 5015.955
cg00000109 0.891363 0.00 277.9261 3100.871
cg00000165 0.9043975 0.00 154.628 2408.774
cg00000236 0.9014224 0.00 305.2133 3705.389
cg00000289 0.6214734 0.00 675.1077 1272.589
cg00000292 0.9092904 0.00 713.512 8154.801
cg00000321 0.7836451 0.00 870.1613 3513.958
cg00000363 0.8763409 0.00 1020.747 7942.445
cg00000622 0.008424433 0.00 17505.3 149.5748
cg00000658 0.808019 0.00 1746.386 7771.165
cg00000714 0.188329 0.00 16454.23 3841.018
cg00000721 0.923583 0.00 174.8408 3321.752
cg00000734 0.06327147 0.00 9802.199 668.8456
cg00000769 0.04804948 0.00 8467.911 432.4633
cg00000807 0.8818892 0.00 1497.769 11929.94
cg00000884 0.8005386 0.00 562.9266 2660.657
cg00000905 0.1378696 0.00 3311.868 545.6168
cg00000924 0.06232621 0.00 10860.34 728.5225
cg00000948 0.8288972 0.00 1675.641 8601.99

Total number of rows: 485577

Table truncated, full table size 20709 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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