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Sample GSM1194250 Query DataSets for GSM1194250
Status Public on Oct 08, 2016
Title OVCAR-4
Sample type genomic
 
Source name Ovary
Organism Homo sapiens
Characteristics tissue: Ovary
cell line: OVCAR-4
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
OVCAR-4.Detection Pval
OVCAR-4.Signal_A
OVCAR-4.Signal_B

Data table
ID_REF VALUE OVCAR-4.Detection Pval OVCAR-4.Signal_A OVCAR-4.Signal_B
cg00000029 0.05286063 0.00 3150.959 181.4387
cg00000108 0.9114751 0.00 458.8427 5753.986
cg00000109 0.8908486 0.00 183.7163 2315.574
cg00000165 0.2219532 0.00 2850.74 841.7565
cg00000236 0.886 0.00 165.7928 2065.724
cg00000289 0.6769186 0.00 561.9031 1386.816
cg00000292 0.9318196 0.00 481.2471 7943.892
cg00000321 0.8714272 0.00 625.5317 4917.435
cg00000363 0.9259608 0.00 422.0995 6529.562
cg00000622 0.006735118 0.00 15627.54 106.6451
cg00000658 0.819504 0.00 1261.818 6183.044
cg00000714 0.246251 0.00 14669.52 4825.228
cg00000721 0.9211357 0.00 307.3888 4758.304
cg00000734 0.06891318 0.00 10368.77 774.8324
cg00000769 0.06710331 0.00 7157.161 522.0081
cg00000807 0.8939801 0.00 1065.555 9828.177
cg00000884 0.2391615 0.00 1104.09 378.493
cg00000905 0.08604748 0.00 2411.613 236.4652
cg00000924 0.04552542 0.00 9207.324 443.9299
cg00000948 0.8032621 0.00 1819.24 7836.069

Total number of rows: 485577

Table truncated, full table size 20744 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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