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Sample GSM1194249 Query DataSets for GSM1194249
Status Public on Oct 08, 2016
Title SK-MEL-28
Sample type genomic
 
Source name Skin
Organism Homo sapiens
Characteristics tissue: Skin
cell line: SK-MEL-28
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
SK-MEL-28.Detection Pval
SK-MEL-28.Signal_A
SK-MEL-28.Signal_B

Data table
ID_REF VALUE SK-MEL-28.Detection Pval SK-MEL-28.Signal_A SK-MEL-28.Signal_B
cg00000029 0.2304387 0.00 2597.859 807.8513
cg00000108 0.9309455 0.00 349.9045 6065.308
cg00000109 0.8525835 0.00 378.152 2765.392
cg00000165 0.8901297 0.00 390.9089 3977.169
cg00000236 0.8301303 0.00 400.021 2443.536
cg00000289 0.5705438 0.00 507.5438 807.1377
cg00000292 0.7623953 0.00 2259.8 7571.822
cg00000321 0.8393683 0.00 878.4061 5112.586
cg00000363 0.9073774 0.00 728.0565 8112.055
cg00000622 0.007992175 0.00 16299.72 132.1254
cg00000658 0.8093755 0.00 1626.509 7330.609
cg00000714 0.06771752 0.00 17516.18 1279.574
cg00000721 0.9460737 0.00 135.7702 4136.313
cg00000734 0.06917049 0.00 11414.72 855.6659
cg00000769 0.05152917 0.00 8661.565 476.0043
cg00000807 0.4852586 0.00 9339.898 8899.211
cg00000884 0.6298454 0.00 826.4671 1576.452
cg00000905 0.06072065 0.00 3233.883 215.5222
cg00000924 0.3892208 0.00 10437 6714.729
cg00000948 0.8831704 0.00 1106.208 9118.301

Total number of rows: 485577

Table truncated, full table size 20801 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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