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Sample GSM1194244 Query DataSets for GSM1194244
Status Public on Oct 08, 2016
Title UACC-62
Sample type genomic
 
Source name Skin
Organism Homo sapiens
Characteristics tissue: Skin
cell line: UACC-62
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
UACC-62.Detection Pval
UACC-62.Signal_A
UACC-62.Signal_B

Data table
ID_REF VALUE UACC-62.Detection Pval UACC-62.Signal_A UACC-62.Signal_B
cg00000029 0.9225033 0.00 147.1715 2942.274
cg00000108 0.9555414 0.00 189.0587 6212.686
cg00000109 0.9120072 0.00 192.455 3031.167
cg00000165 0.8936995 0.00 176.6058 2325.505
cg00000236 0.9057555 0.00 272.8333 3583.187
cg00000289 0.6183894 0.00 612.4597 1154.521
cg00000292 0.895506 0.00 900.0101 8570.017
cg00000321 0.8614755 0.00 903.4064 6240.123
cg00000363 0.9157892 0.00 815.1035 9951.711
cg00000622 0.01155301 0.00 16462.83 193.5871
cg00000658 0.855986 0.00 1365.298 8709.394
cg00000714 0.2197956 0.00 17169.25 4865.013
cg00000721 0.9332269 0.00 191.3229 4071.554
cg00000734 0.07535062 0.00 14471.48 1187.445
cg00000769 0.06698721 0.00 10309.48 747.366
cg00000807 0.9002717 0.00 1365.298 13227.61
cg00000884 0.7974467 0.00 430.1935 2087.357
cg00000905 0.04460759 0.00 3825.326 183.2748
cg00000924 0.5486225 0.00 6705.358 8271.51
cg00000948 0.8790356 0.00 1398.129 10886.74

Total number of rows: 485577

Table truncated, full table size 20829 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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