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Sample GSM1194243 Query DataSets for GSM1194243
Status Public on Oct 08, 2016
Title K-562
Sample type genomic
 
Source name Haematopoietic and Lymphoid Tissue
Organism Homo sapiens
Characteristics tissue: Haematopoietic and Lymphoid Tissue
cell line: K-562
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
K-562.Detection Pval
K-562.Signal_A
K-562.Signal_B

Data table
ID_REF VALUE K-562.Detection Pval K-562.Signal_A K-562.Signal_B
cg00000029 0.3273901 0.00 2626.773 1327.246
cg00000108 0.8007954 0.00 1551.846 6640.364
cg00000109 0.8856726 0.00 210.3118 2403.927
cg00000165 0.7841968 0.00 681.92 2841.381
cg00000236 0.8509605 0.00 479.0435 3306.124
cg00000289 0.715638 0.00 309.0946 1029.546
cg00000292 0.8433592 0.00 1737.728 9894.391
cg00000321 0.2434715 0.00 3738.876 1235.455
cg00000363 0.6958593 0.00 3499.886 8236.366
cg00000622 0.00 0.00 15586.44 0.00
cg00000658 0.8606163 0.00 1223.632 8172.692
cg00000714 0.269985 0.00 16095.23 5989.559
cg00000721 0.0438644 0.00 3432.968 162.0811
cg00000734 0.07288537 0.00 8893.64 707.0375
cg00000769 0.03884096 0.00 10541.06 430.0111
cg00000807 0.5466202 0.00 8753.432 10674.2
cg00000884 0.1031132 0.00 1849.257 224.1019
cg00000905 0.08628136 0.00 2947.552 287.7767
cg00000924 0.4424368 0.00 9273.9 7438.365
cg00000948 0.6145857 0.00 5929.093 9614.056

Total number of rows: 485577

Table truncated, full table size 20805 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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