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Sample GSM1194242 Query DataSets for GSM1194242
Status Public on Oct 08, 2016
Title U251
Sample type genomic
 
Source name Central Nervous System
Organism Homo sapiens
Characteristics tissue: Central Nervous System
cell line: U251
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
U251.Detection Pval
U251.Signal_A
U251.Signal_B

Data table
ID_REF VALUE U251.Detection Pval U251.Signal_A U251.Signal_B
cg00000029 0.6750676 0.00 1148.232 2593.281
cg00000108 0.9462445 0.00 263.0364 6390.437
cg00000109 0.9517612 0.00 31.22806 2589.158
cg00000165 0.9046706 0.00 252.2267 3342.611
cg00000236 0.9398177 0.00 127.3144 3549.785
cg00000289 0.5675396 0.00 725.4519 1083.282
cg00000292 0.798011 0.00 2450.202 10075.25
cg00000321 0.8563772 0.00 1055.749 6891.365
cg00000363 0.8279287 0.00 1896.504 9606.271
cg00000622 0.007280861 0.00 19879.06 146.5317
cg00000658 0.8474389 0.00 1613.05 9515.567
cg00000714 0.1858696 0.00 15881.87 3648.733
cg00000721 0.9624839 0.00 46.84209 3767.266
cg00000734 0.07053656 0.00 11906.3 911.1526
cg00000769 0.06293695 0.00 10534.95 714.2859
cg00000807 0.7925184 0.00 3326.99 13090.09
cg00000884 0.5900636 0.00 1204.683 1877.964
cg00000905 0.1030308 0.00 4458.406 523.6036
cg00000924 0.05414772 0.00 12413.16 716.3474
cg00000948 0.7770125 0.00 3055.546 10995.67

Total number of rows: 485577

Table truncated, full table size 20796 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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