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Sample GSM1194240 Query DataSets for GSM1194240
Status Public on Oct 08, 2016
Title SK-OV-3
Sample type genomic
 
Source name Ovary
Organism Homo sapiens
Characteristics tissue: Ovary
cell line: SK-OV-3
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
SK-OV-3.Detection Pval
SK-OV-3.Signal_A
SK-OV-3.Signal_B

Data table
ID_REF VALUE SK-OV-3.Detection Pval SK-OV-3.Signal_A SK-OV-3.Signal_B
cg00000029 0.3679588 0.00 3158.01 1896.733
cg00000108 0.9637593 0.00 83.6502 4883.863
cg00000109 0.9164993 0.00 133.6678 2564.724
cg00000165 0.7426798 0.00 477.7547 1667.521
cg00000236 0.9124003 0.00 228.5289 3421.815
cg00000289 0.7734889 0.00 432.9113 1819.783
cg00000292 0.917506 0.00 558.8178 7327.431
cg00000321 0.8319294 0.00 1272 6791.238
cg00000363 0.6349327 0.00 3856.533 6881.286
cg00000622 0.01245582 0.00 16035.83 203.5201
cg00000658 0.8221975 0.00 1735.957 8489.866
cg00000714 0.3548225 0.00 14211.91 7870.992
cg00000721 0.9328415 0.00 180.236 3892.519
cg00000734 0.08119848 0.00 11719.65 1044.554
cg00000769 0.06526103 0.00 10393.97 732.6613
cg00000807 0.9027377 0.00 1209.047 12149.9
cg00000884 0.8963177 0.00 281.996 3302.297
cg00000905 0.1290213 0.00 3000.196 459.2435
cg00000924 0.4610784 0.00 8618.558 7459.229
cg00000948 0.8100635 0.00 2243.033 9992.845

Total number of rows: 485577

Table truncated, full table size 20827 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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