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Sample GSM1194239 Query DataSets for GSM1194239
Status Public on Oct 08, 2016
Title SW-620
Sample type genomic
 
Source name Large Intestine
Organism Homo sapiens
Characteristics tissue: Large Intestine
cell line: SW-620
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
SW-620.Detection Pval
SW-620.Signal_A
SW-620.Signal_B

Data table
ID_REF VALUE SW-620.Detection Pval SW-620.Signal_A SW-620.Signal_B
cg00000029 0.6157796 0.00 1873.695 3163.187
cg00000108 0.9482565 0.00 262.7255 6647.343
cg00000109 0.8729179 0.00 289.3531 2674.438
cg00000165 0.9329014 0.00 138.4635 3315.465
cg00000236 0.8837278 0.00 384.3248 3681.114
cg00000289 0.6698342 0.00 545.8655 1310.32
cg00000292 0.8944392 0.00 801.4904 7638.517
cg00000321 0.4841224 0.00 3271.643 3164.099
cg00000363 0.8943054 0.00 1018.949 9467.676
cg00000622 0.01206732 0.00 16104.37 197.9317
cg00000658 0.8153927 0.00 1919.849 8921.481
cg00000714 0.3018434 0.00 14155.23 6163.154
cg00000721 0.931744 0.00 181.9552 3848.894
cg00000734 0.06139432 0.00 11247.49 742.241
cg00000769 0.08016452 0.00 9619.954 847.1031
cg00000807 0.7501075 0.00 3978.162 12241.51
cg00000884 0.6973118 0.00 1015.399 2569.576
cg00000905 0.1075164 0.00 3624.015 448.6273
cg00000924 0.05952095 0.00 13875.64 884.4887
cg00000948 0.8689715 0.00 1402.386 9963.72

Total number of rows: 485577

Table truncated, full table size 20834 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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