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Sample GSM1194238 Query DataSets for GSM1194238
Status Public on Oct 08, 2016
Title SR
Sample type genomic
 
Source name Haematopoietic and Lymphoid Tissue
Organism Homo sapiens
Characteristics tissue: Haematopoietic and Lymphoid Tissue
cell line: SR
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
SR.Detection Pval
SR.Signal_A
SR.Signal_B

Data table
ID_REF VALUE SR.Detection Pval SR.Signal_A SR.Signal_B
cg00000029 0.9334685 0.00 112.9815 2988.233
cg00000108 0.922771 0.00 453.8575 6617.768
cg00000109 0.9154876 0.00 132.2946 2516.353
cg00000165 0.8976392 0.00 251.0701 3078.66
cg00000236 0.9108735 0.00 247.2075 3548.462
cg00000289 0.6853265 0.00 596.7743 1517.503
cg00000292 0.8998068 0.00 994.6238 9830.509
cg00000321 0.8184832 0.00 1153.957 5654.257
cg00000363 0.9112219 0.00 725.2064 8469.953
cg00000622 0.006615135 0.00 17591.32 117.8098
cg00000658 0.799372 0.00 1956.416 8193.477
cg00000714 0.285118 0.00 15372.25 6170.832
cg00000721 0.9255686 0.00 283.9023 4773.898
cg00000734 0.08064073 0.00 10849.13 960.3923
cg00000769 0.05917314 0.00 10724.38 680.7975
cg00000807 0.4372484 0.00 10623.16 8331.715
cg00000884 0.8825706 0.00 282.9367 2878.059
cg00000905 0.2197626 0.00 3711.975 1073.685
cg00000924 0.6224999 0.00 5075.479 8534.395
cg00000948 0.8776199 0.00 1396.336 10730.62

Total number of rows: 485577

Table truncated, full table size 20800 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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