NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1194236 Query DataSets for GSM1194236
Status Public on Oct 08, 2016
Title HL-60_TB
Sample type genomic
 
Source name Haematopoietic and Lymphoid Tissue
Organism Homo sapiens
Characteristics tissue: Haematopoietic and Lymphoid Tissue
cell line: HL-60_TB
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
HL-60_TB.Detection Pval
HL-60_TB.Signal_A
HL-60_TB.Signal_B

Data table
ID_REF VALUE HL-60_TB.Detection Pval HL-60_TB.Signal_A HL-60_TB.Signal_B
cg00000029 0.2614414 0.00 3458.281 1259.592
cg00000108 0.9394944 0.00 330.6009 6686.113
cg00000109 0.8862575 0.00 241.8435 2663.573
cg00000165 0.8479788 0.00 391.6725 2742.563
cg00000236 0.9119664 0.00 127.0289 2351.861
cg00000289 0.5126245 0.00 793.1165 939.3853
cg00000292 0.9057571 0.00 811.8452 8763.633
cg00000321 0.8212925 0.00 992.6171 5021.38
cg00000363 0.131054 0.00 8223.495 1255.345
cg00000622 0.01301499 0.00 16387.55 217.4149
cg00000658 0.8369067 0.00 1409.533 7746.106
cg00000714 0.2036445 0.00 15085.5 3883.246
cg00000721 0.9135417 0.00 337.9295 4627.279
cg00000734 0.07905086 0.00 11101.19 961.4685
cg00000769 0.06880659 0.00 9762.473 728.7455
cg00000807 0.530311 0.00 8740.567 9981.605
cg00000884 0.8587204 0.00 394.1154 3003.315
cg00000905 0.1205819 0.00 3009.608 426.3756
cg00000924 0.3784211 0.00 10805.6 6639.398
cg00000948 0.8958365 0.00 1034.146 9753.979

Total number of rows: 485577

Table truncated, full table size 20771 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap