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Sample GSM1194234 Query DataSets for GSM1194234
Status Public on Oct 08, 2016
Title OVCAR-5
Sample type genomic
 
Source name Ovary
Organism Homo sapiens
Characteristics tissue: Ovary
cell line: OVCAR-5
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
OVCAR-5.Detection Pval
OVCAR-5.Signal_A
OVCAR-5.Signal_B

Data table
ID_REF VALUE OVCAR-5.Detection Pval OVCAR-5.Signal_A OVCAR-5.Signal_B
cg00000029 0.0469089 0.00 3572.409 180.7473
cg00000108 0.9538679 0.00 172.9205 5643.14
cg00000109 0.9438082 0.00 142.1791 4067.684
cg00000165 0.8828627 0.00 206.2237 2308.004
cg00000236 0.86397 0.00 272.8301 2367.964
cg00000289 0.674867 0.00 432.9417 1106.208
cg00000292 0.884853 0.00 1251.432 10385.15
cg00000321 0.8627229 0.00 689.1201 4959.254
cg00000363 0.5698761 0.00 3987.418 5415.468
cg00000622 0.004321506 0.00 24985.09 108.8759
cg00000658 0.8508121 0.00 1083.635 6750.217
cg00000714 0.1825563 0.00 23592.76 5291.204
cg00000721 0.9474414 0.00 55.07838 2795.5
cg00000734 0.04174174 0.00 12408 544.8489
cg00000769 0.03479671 0.00 9565.704 348.46
cg00000807 0.8687312 0.00 2021.248 14038.33
cg00000884 0.845233 0.00 243.3696 1875.253
cg00000905 0.06888498 0.00 4116.789 311.9629
cg00000924 0.3131266 0.00 15035.12 6899.681
cg00000948 0.8785901 0.00 1590.868 12236.07

Total number of rows: 485577

Table truncated, full table size 20687 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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