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Sample GSM1194231 Query DataSets for GSM1194231
Status Public on Oct 08, 2016
Title NCI-ADR-RES
Sample type genomic
 
Source name Ovary
Organism Homo sapiens
Characteristics tissue: Ovary
cell line: NCI-ADR-RES
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
NCI-ADR-RES.Detection Pval
NCI-ADR-RES.Signal_A
NCI-ADR-RES.Signal_B

Data table
ID_REF VALUE NCI-ADR-RES.Detection Pval NCI-ADR-RES.Signal_A NCI-ADR-RES.Signal_B
cg00000029 0.8941321 0.00 343.3105 3744.082
cg00000108 0.9599909 0.00 167.2539 6412.567
cg00000109 0.8786032 0.00 211.268 2252.787
cg00000165 0.9472412 0.00 69.44458 3042.241
cg00000236 0.9006596 0.00 398.0837 4515.827
cg00000289 0.7818632 0.00 514.4767 2202.456
cg00000292 0.9026068 0.00 727.701 7670.847
cg00000321 0.8401188 0.00 1155.127 6595.251
cg00000363 0.9329591 0.00 580.009 9463.197
cg00000622 0.009278057 0.00 17446.24 164.3196
cg00000658 0.8153062 0.00 1672.539 7824.637
cg00000714 0.16744 0.00 14327.1 2901.5
cg00000721 0.9378479 0.00 254.3041 5346.292
cg00000734 0.06062436 0.00 12955.82 842.5815
cg00000769 0.05481915 0.00 9622.579 563.8958
cg00000807 0.8877972 0.00 1329.228 11308.67
cg00000884 0.8781607 0.00 265.0631 2631.203
cg00000905 0.1054595 0.00 2967.533 361.639
cg00000924 0.06900692 0.00 11783.08 880.7959
cg00000948 0.8879144 0.00 1134.588 9780.097

Total number of rows: 485577

Table truncated, full table size 20778 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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