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Sample GSM1194230 Query DataSets for GSM1194230
Status Public on Oct 08, 2016
Title PC-3
Sample type genomic
 
Source name Prostate
Organism Homo sapiens
Characteristics tissue: Prostate
cell line: PC-3
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
PC-3.Detection Pval
PC-3.Signal_A
PC-3.Signal_B

Data table
ID_REF VALUE PC-3.Detection Pval PC-3.Signal_A PC-3.Signal_B
cg00000029 0.2815808 0.00 3609.608 1453.962
cg00000108 0.9376819 0.00 380.3388 7227.511
cg00000109 0.9330158 0.00 107.1207 2884.961
cg00000165 0.8098465 0.00 671.611 3286.221
cg00000236 0.9215841 0.00 127.582 2674.662
cg00000289 0.6710638 0.00 616.2452 1461.214
cg00000292 0.9253185 0.00 475.4235 7129.613
cg00000321 0.8123308 0.00 1030.285 4892.469
cg00000363 0.3478877 0.00 10176.47 5482.272
cg00000622 0.01142382 0.00 18752.15 217.8523
cg00000658 0.8286347 0.00 1676.62 8590.827
cg00000714 0.2450182 0.00 17306.62 5649.061
cg00000721 0.9385036 0.00 166.0973 4060.942
cg00000734 0.07341859 0.00 11233.24 898.0001
cg00000769 0.06783445 0.00 10014.57 736.0458
cg00000807 0.7170773 0.00 4497.868 11653.45
cg00000884 0.7724079 0.00 713.7371 2761.683
cg00000905 0.1524739 0.00 2869.392 534.2073
cg00000924 0.4593442 0.00 9065.545 7787.099
cg00000948 0.8406056 0.00 1852.346 10296.18

Total number of rows: 485577

Table truncated, full table size 20823 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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