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Sample GSM1194228 Query DataSets for GSM1194228
Status Public on Oct 08, 2016
Title CCRF-CEM
Sample type genomic
 
Source name Haematopoietic and Lymphoid Tissue
Organism Homo sapiens
Characteristics tissue: Haematopoietic and Lymphoid Tissue
cell line: CCRF-CEM
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
CCRF-CEM.Detection Pval
CCRF-CEM.Signal_A
CCRF-CEM.Signal_B

Data table
ID_REF VALUE CCRF-CEM.Detection Pval CCRF-CEM.Signal_A CCRF-CEM.Signal_B
cg00000029 0.8485462 0.00 608.3044 3968.397
cg00000108 0.9429612 0.00 329.5767 7101.735
cg00000109 0.9646617 0.00 0.00 2729.788
cg00000165 0.718782 0.00 893.6236 2539.663
cg00000236 0.9144052 0.00 247.6533 3713.965
cg00000289 0.7635084 0.00 440.6911 1745.61
cg00000292 0.88955 0.00 1129.977 9906.082
cg00000321 0.8118225 0.00 1196.834 5594.713
cg00000363 0.354527 0.00 8295.915 4611.468
cg00000622 0.007525843 0.00 18651.21 142.1888
cg00000658 0.8013824 0.00 1967.102 8340.345
cg00000714 0.4137204 0.00 14493.84 10298.45
cg00000721 0.9032231 0.00 340.8764 4114.719
cg00000734 0.07537704 0.00 12990.03 1067.124
cg00000769 0.04636296 0.00 10826.88 531.2322
cg00000807 0.758562 0.00 3670.542 11846.48
cg00000884 0.8284765 0.00 544.2723 3111.902
cg00000905 0.1410124 0.00 4038.727 679.418
cg00000924 0.7496434 0.00 3482.213 10726.23
cg00000948 0.8837118 0.00 1340.906 10949.91

Total number of rows: 485577

Table truncated, full table size 20771 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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