NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1194227 Query DataSets for GSM1194227
Status Public on Oct 08, 2016
Title M14
Sample type genomic
 
Source name Skin
Organism Homo sapiens
Characteristics tissue: Skin
cell line: M14
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
M14.Detection Pval
M14.Signal_A
M14.Signal_B

Data table
ID_REF VALUE M14.Detection Pval M14.Signal_A M14.Signal_B
cg00000029 0.4845897 0.00 2283.23 2240.717
cg00000108 0.9198726 0.00 575.6042 7756.021
cg00000109 0.7950144 0.00 509.0147 2361.998
cg00000165 0.7342027 0.00 1236.985 3693.107
cg00000236 0.8806494 0.00 259.5862 2653.271
cg00000289 0.5082545 0.00 865.6635 998.0833
cg00000292 0.8557942 0.00 1845.319 11544.56
cg00000321 0.00 2278.715 6850.39
cg00000363 0.9096867 0.00 898.394 10056.38
cg00000622 0.009454942 0.00 18700.36 179.4531
cg00000658 0.8217132 0.00 1976.241 9569.272
cg00000714 0.07394528 0.00 20379.77 1635.306
cg00000721 0.9332201 0.00 241.528 4772.707
cg00000734 0.07437529 0.00 15612.42 1262.516
cg00000769 0.05499753 0.00 12301.08 721.7216
cg00000807 0.4647869 0.00 10860.86 9518.573
cg00000884 0.6009577 0.00 1094.777 1799.333
cg00000905 0.05521785 0.00 5342.961 318.1142
cg00000924 0.3507856 0.00 12278.43 6688.351
cg00000948 0.8469795 0.00 2066.532 11991.91

Total number of rows: 485577

Table truncated, full table size 20819 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap