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Sample GSM1194226 Query DataSets for GSM1194226
Status Public on Oct 08, 2016
Title UACC-257
Sample type genomic
 
Source name Skin
Organism Homo sapiens
Characteristics tissue: Skin
cell line: UACC-257
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
UACC-257.Detection Pval
UACC-257.Signal_A
UACC-257.Signal_B

Data table
ID_REF VALUE UACC-257.Detection Pval UACC-257.Signal_A UACC-257.Signal_B
cg00000029 0.4098507 0.00 2484.588 1794.962
cg00000108 0.9079532 0.00 507.627 5993.659
cg00000109 0.9314101 0.00 133.8679 3175.785
cg00000165 0.8983686 0.00 338.418 3875.387
cg00000236 0.8883107 0.00 222.7562 2567.012
cg00000289 0.5840356 0.00 894.2375 1395.961
cg00000292 0.8900848 0.00 1110.568 9803.087
cg00000321 0.9059189 0.00 449.7961 5294.056
cg00000363 0.9142622 0.00 940.288 11093.08
cg00000622 0.006041992 0.00 18398.8 112.449
cg00000658 0.8047697 0.00 1953.4 8464.435
cg00000714 0.118265 0.00 19215.93 2590.8
cg00000721 0.9343841 0.00 268.8067 5251.885
cg00000734 0.06920842 0.00 12362.97 926.676
cg00000769 0.05611636 0.00 9557.631 574.1715
cg00000807 0.7785539 0.00 3596.227 12995.09
cg00000884 0.8012321 0.00 391.9652 1983.108
cg00000905 0.06764097 0.00 5056.993 374.1306
cg00000924 0.0519834 0.00 12895.23 712.5782
cg00000948 0.8657847 0.00 1658.891 11346.1

Total number of rows: 485577

Table truncated, full table size 20812 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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