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Sample GSM1194225 Query DataSets for GSM1194225
Status Public on Oct 08, 2016
Title EKVX
Sample type genomic
 
Source name Lung
Organism Homo sapiens
Characteristics tissue: Lung
cell line: EKVX
cell type: Cancer cell line
Extracted molecule genomic DNA
Extraction protocol unknown
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description NCI60 panel
Data processing Genome Studio V2011.2
Unmethylated and methylated signal intensities
 
Submission date Jul 23, 2013
Last update date Oct 08, 2016
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE49143 The NCI60 DNA methylome

Data table header descriptions
ID_REF
VALUE Average Beta
EKVX.Detection Pval
EKVX.Signal_A
EKVX.Signal_B

Data table
ID_REF VALUE EKVX.Detection Pval EKVX.Signal_A EKVX.Signal_B
cg00000029 0.3555251 0.00 3492.188 1981.633
cg00000108 0.9480979 0.00 228.0652 5992.776
cg00000109 0.9249242 0.00 76.98404 2180.421
cg00000165 0.2462245 0.00 2429.809 826.3745
cg00000236 0.8968615 0.00 324.2953 3689.543
cg00000289 0.6313397 0.00 564.8704 1138.607
cg00000292 0.8930207 0.00 932.4691 8618.648
cg00000321 0.00 2620.344 5203.869
cg00000363 0.5258539 0.00 5313.823 6004.225
cg00000622 0.007457982 0.00 17957.49 135.6844
cg00000658 0.8242704 0.00 1526.208 7627.832
cg00000714 0.1860929 0.00 15649.89 3601.078
cg00000721 0.9268233 0.00 205.9323 3874.801
cg00000734 0.06943541 0.00 10779.69 811.8036
cg00000769 0.06090362 0.00 9239.99 605.7304
cg00000807 0.8693451 0.00 1744.651 12273.85
cg00000884 0.7863553 0.00 841.0506 3463.695
cg00000905 0.07857316 0.00 5953.753 516.2238
cg00000924 0.5705168 0.00 7241.311 9752.051
cg00000948 0.9091333 0.00 866.0704 9665.667

Total number of rows: 485577

Table truncated, full table size 20827 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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