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Status
Public on Jul 17, 2024
Title
NU21
Sample type
RNA
Source name
Homo Sapiens
Organism
Homo sapiens Characteristics
sample type: Normal Ureter
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted using the RNeasy Mini kit (Qiagen Inc., Valencia, CA, USA) and the RNAprotect reagent (Qiagen) and DNA was removed by on-column DNase digestion with the RNase-Free DNase set (Qiagen). RNA quality and concentration was determined by analysis with an Agilent 2100 bioanalyzer at the Harvard-Partners Center for Genetics and Genomics (Harvard Medical School, Cambridge, MA USA).
Label
Cy3
Label protocol
Cy3 9mer Wobble TriLink, Biotechnologies, 50 O.D., N46-0001-50
Hybridization protocol
MAUI Hybridization System, BioMicro Systems, 02-A002-03
Scan protocol
DNA Microarray Scanner, Agilent, G2565B
Data processing
Raw values were trimmed to exclude 4295 random probes. Raw values were log2-transformed, and samples were median centered. The median-centered log2 values were then quantile-normalized in R (normalize.quantiles).
Submission date
Jul 18, 2013
Last update date
Jul 17, 2024
Contact name
Bogdan Czerniak
E-mail(s)
bczernia@mdanderson.org Organization name
UT MD Anderson Cancer Center
Department
Pathology
Street address
1515 Holcombe
City
Houston
State/province
TX
ZIP/Postal code
77030
Country
USA
Platform ID
GPL17471 Series (1)
GSE49024 Expression analysis of RB1 region in bladder cancer cases
Data table header descriptions ID_REF VALUE quantile-normalized, median-centered, log2 transformed raw intensity values.
Data table ID_REF VALUE CHR13FS045100002
-0.02045948
CHR13FS045100011
-0.015784256
CHR13FS045100019
-0.30826383
CHR13FS045100027
-0.168481911
CHR13FS045100038
-0.193606733
CHR13FS045100047
0.019071821
CHR13FS045100054
0.099002596
CHR13FS045100065
0.113614652
CHR13FS045100074
-0.031743036
CHR13FS045100083
0.116772655
CHR13FS045100091
-0.241340443
CHR13FS045100099
-0.216952418
CHR13FS045100108
0.277162398
CHR13FS045100117
-0.006999302
CHR13FS045100126
0.16482069
CHR13FS045100135
0.260025239
CHR13FS045100145
0.023446434
CHR13FS045100189
-0.02156304
CHR13FS045100198
0.033938619
CHR13FS045100206
-0.503397009
385012 11049 Kbytes .Supplementary file Size Download File type/resource GSM1192539_10341202.csv.gz
5.3 Mb
(ftp) (http) CSV
GSM1192539_10341202_532.pair.gz
5.8 Mb
(ftp) (http) PAIR
Processed data included within Sample table Processed data provided as supplementary file
