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Sample GSM1185601 Query DataSets for GSM1185601
Status Public on Aug 07, 2013
Title 7.25 MONO
Sample type genomic
 
Source name Bone marrow cells
Organism Homo sapiens
Characteristics cell type: Monocytes
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy5 and Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Normal human bone marrow cells
Data processing Background corrected against out-of-band signals and dye bias corrected against Illumina internal controls
 
Submission date Jul 12, 2013
Last update date Aug 08, 2013
Contact name Peter W. Laird
Organization name USC/Norris Cancer Center
Department USC Epigenome Center
Lab Laird
Street address 1450 Biggy St.
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE49618 Sorted normal bone marrow cells from healthy volunteers at Washington University

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the methylated probe intensity
UNMETHYLATED the unmethylated probe intensity
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.52737 0.57143 3960 2970 0
cg00000108 0.95632 0.94427 9912 585 0
cg00000109 0.91565 0.91338 4429 420 0
cg00000165 0.12964 0.22067 980 3461 0
cg00000236 0.74857 0.73277 4390 1601 0
cg00000289 0.60833 0.6349 1186 682 0
cg00000292 0.79181 0.79716 9200 2341 0
cg00000321 0.18018 0.25229 2120 6283 0
cg00000363 0.3365 0.40586 5557 8135 0
cg00000622 0.016608 0.016342 238 14326 0
cg00000658 0.85504 0.83668 8089 1579 0
cg00000714 0.15784 0.21235 4331 16065 0
cg00000721 0.93668 0.92796 6209 482 0
cg00000734 0.04967 0.097638 1108 10240 0
cg00000769 0.043017 0.071636 890 11534 0
cg00000807 0.84077 0.8477 14627 2628 0
cg00000884 0.91755 0.90234 5100 552 0
cg00000905 0.060252 0.12103 651 4728 0
cg00000924 0.42654 0.49391 7994 8191 0
cg00000948 0.89161 0.8753 11041 1573 0

Total number of rows: 485577

Table truncated, full table size 18647 Kbytes.




Supplementary file Size Download File type/resource
GSM1185601_7796806148_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1185601_7796806148_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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