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Sample GSM1185600 Query DataSets for GSM1185600
Status Public on Aug 07, 2013
Title 7.25 PROS
Sample type genomic
 
Source name Bone marrow cells
Organism Homo sapiens
Characteristics cell type: Promyelocytes
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy5 and Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Normal human bone marrow cells
Data processing Background corrected against out-of-band signals and dye bias corrected against Illumina internal controls
 
Submission date Jul 12, 2013
Last update date Aug 08, 2013
Contact name Peter W. Laird
Organization name USC/Norris Cancer Center
Department USC Epigenome Center
Lab Laird
Street address 1450 Biggy St.
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE49618 Sorted normal bone marrow cells from healthy volunteers at Washington University

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the methylated probe intensity
UNMETHYLATED the unmethylated probe intensity
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.48898 0.50979 3385 3255 0
cg00000108 0.95415 0.92885 9726 745 0
cg00000109 0.90906 0.87456 4267 612 0
cg00000165 0.12564 0.1958 885 3635 0
cg00000236 0.73612 0.7074 4475 1851 0
cg00000289 0.57757 0.56999 1018 768 0
cg00000292 0.84634 0.82414 9274 1979 0
cg00000321 0.21592 0.2623 2367 6657 0
cg00000363 0.33155 0.37153 5003 8463 0
cg00000622 0.016035 0.016247 240 14532 0
cg00000658 0.87649 0.84009 7754 1476 0
cg00000714 0.13398 0.16717 3247 16176 0
cg00000721 0.93083 0.89966 5819 649 0
cg00000734 0.067892 0.10772 1203 9965 0
cg00000769 0.046515 0.075604 864 10564 0
cg00000807 0.83216 0.82296 12309 2648 0
cg00000884 0.91175 0.87766 4405 614 0
cg00000905 0.057559 0.10655 597 5006 0
cg00000924 0.44879 0.48403 7287 7768 0
cg00000948 0.90231 0.86983 9629 1441 0

Total number of rows: 485577

Table truncated, full table size 18626 Kbytes.




Supplementary file Size Download File type/resource
GSM1185600_7796806148_R01C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1185600_7796806148_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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