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Sample GSM1185599 Query DataSets for GSM1185599
Status Public on Aug 07, 2013
Title 7.18 PMN
Sample type genomic
 
Source name Bone marrow cells
Organism Homo sapiens
Characteristics cell type: Polymorphonuclear granulocytes
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy5 and Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Normal human bone marrow cells
Data processing Background corrected against out-of-band signals and dye bias corrected against Illumina internal controls
 
Submission date Jul 12, 2013
Last update date Aug 08, 2013
Contact name Peter W. Laird
Organization name USC/Norris Cancer Center
Department USC Epigenome Center
Lab Laird
Street address 1450 Biggy St.
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE49618 Sorted normal bone marrow cells from healthy volunteers at Washington University

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the methylated probe intensity
UNMETHYLATED the unmethylated probe intensity
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.55988 0.6394 5362 3024 0
cg00000108 0.93863 0.92696 14925 1176 0
cg00000109 0.93862 0.93417 7407 522 0
cg00000165 0.18115 0.31342 1826 4000 0
cg00000236 0.7158 0.75231 6518 2146 0
cg00000289 0.61286 0.659 1718 889 0
cg00000292 0.85102 0.86625 13867 2141 0
cg00000321 0.24878 0.35999 4011 7131 0
cg00000363 0.32836 0.43733 7536 9696 0
cg00000622 0.015464 0.018176 276 14909 0
cg00000658 0.88802 0.88016 10378 1413 0
cg00000714 0.14521 0.22513 5464 18806 0
cg00000721 0.94095 0.9305 8716 651 0
cg00000734 0.062422 0.13691 1731 10912 0
cg00000769 0.038506 0.06827 1192 16268 0
cg00000807 0.86255 0.8837 20228 2662 0
cg00000884 0.92044 0.90705 6860 703 0
cg00000905 0.049651 0.11816 736 5493 0
cg00000924 0.49179 0.59421 12277 8384 0
cg00000948 0.90939 0.90452 14333 1513 0

Total number of rows: 485577

Table truncated, full table size 18746 Kbytes.




Supplementary file Size Download File type/resource
GSM1185599_7796806148_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1185599_7796806148_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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