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Sample GSM1185598 Query DataSets for GSM1185598
Status Public on Aug 07, 2013
Title 7.18 MONO
Sample type genomic
 
Source name Bone marrow cells
Organism Homo sapiens
Characteristics cell type: Monocytes
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy5 and Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Normal human bone marrow cells
Data processing Background corrected against out-of-band signals and dye bias corrected against Illumina internal controls
 
Submission date Jul 12, 2013
Last update date Aug 08, 2013
Contact name Peter W. Laird
Organization name USC/Norris Cancer Center
Department USC Epigenome Center
Lab Laird
Street address 1450 Biggy St.
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE49618 Sorted normal bone marrow cells from healthy volunteers at Washington University

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the methylated probe intensity
UNMETHYLATED the unmethylated probe intensity
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.57012 0.60994 5562 3557 0
cg00000108 0.96 0.94585 13713 785 0
cg00000109 0.92787 0.91257 7077 678 0
cg00000165 0.18465 0.28556 1799 4501 0
cg00000236 0.72798 0.72958 6769 2509 0
cg00000289 0.62733 0.63946 1802 1016 0
cg00000292 0.8451 0.8406 13643 2587 0
cg00000321 0.21855 0.29378 3872 9308 0
cg00000363 0.3443 0.41612 8287 11628 0
cg00000622 0.016099 0.018268 341 18326 0
cg00000658 0.8761 0.85567 11430 1928 0
cg00000714 0.1358 0.18909 5293 22699 0
cg00000721 0.93925 0.92448 8434 689 0
cg00000734 0.067131 0.12519 1853 12949 0
cg00000769 0.055978 0.089912 1524 15426 0
cg00000807 0.87075 0.87174 20370 2997 0
cg00000884 0.91059 0.88507 6523 847 0
cg00000905 0.048128 0.099179 761 6912 0
cg00000924 0.459 0.52642 11147 10028 0
cg00000948 0.9063 0.88729 14769 1876 0

Total number of rows: 485577

Table truncated, full table size 18815 Kbytes.




Supplementary file Size Download File type/resource
GSM1185598_7796806148_R05C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1185598_7796806148_R05C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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