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Sample GSM1185596 Query DataSets for GSM1185596
Status Public on Aug 07, 2013
Title 7.11 PMN
Sample type genomic
 
Source name Bone marrow cells
Organism Homo sapiens
Characteristics cell type: Polymorphonuclear granulocytes
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy5 and Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Normal human bone marrow cells
Data processing Background corrected against out-of-band signals and dye bias corrected against Illumina internal controls
 
Submission date Jul 12, 2013
Last update date Aug 08, 2013
Contact name Peter W. Laird
Organization name USC/Norris Cancer Center
Department USC Epigenome Center
Lab Laird
Street address 1450 Biggy St.
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE49618 Sorted normal bone marrow cells from healthy volunteers at Washington University

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the methylated probe intensity
UNMETHYLATED the unmethylated probe intensity
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.45739 0.5273 3651 3273 0
cg00000108 0.95341 0.94741 10485 582 0
cg00000109 0.88895 0.87602 4826 683 0
cg00000165 0.16399 0.27359 1322 3510 0
cg00000236 0.64581 0.67381 4937 2390 0
cg00000289 0.61813 0.66219 1480 755 0
cg00000292 0.85469 0.85288 12041 2077 0
cg00000321 0.41957 0.50043 5864 5854 0
cg00000363 0.41285 0.49585 8178 8315 0
cg00000622 0.016206 0.0072096 108 14872 0
cg00000658 0.85735 0.84699 9848 1779 0
cg00000714 0.16296 0.22941 5404 18152 0
cg00000721 0.92346 0.91279 6772 647 0
cg00000734 0.057771 0.11511 1524 11716 0
cg00000769 0.040184 0.068121 1046 14309 0
cg00000807 0.8573 0.86539 16676 2594 0
cg00000884 0.90074 0.88281 5808 771 0
cg00000905 0.046024 0.091462 571 5672 0
cg00000924 0.44136 0.52384 10634 9666 0
cg00000948 0.90825 0.89411 13332 1579 0

Total number of rows: 485577

Table truncated, full table size 18712 Kbytes.




Supplementary file Size Download File type/resource
GSM1185596_7796806148_R03C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1185596_7796806148_R03C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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