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Sample GSM1185591 Query DataSets for GSM1185591
Status Public on Aug 07, 2013
Title 9.1 CD3
Sample type genomic
 
Source name Bone marrow cells
Organism Homo sapiens
Characteristics cell type: CD3+ T cells
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy5 and Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Normal human bone marrow cells
Data processing Background corrected against out-of-band signals and dye bias corrected against Illumina internal controls
 
Submission date Jul 12, 2013
Last update date Jan 27, 2014
Contact name Peter W. Laird
Organization name USC/Norris Cancer Center
Department USC Epigenome Center
Lab Laird
Street address 1450 Biggy St.
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE49618 Sorted normal bone marrow cells from healthy volunteers at Washington University

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the methylated probe intensity
UNMETHYLATED the unmethylated probe intensity
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.64977 0.70369 2845 1198 0
cg00000108 0.88476 0.89496 10062 1181 0
cg00000109 0.86082 0.87805 4284 595 0
cg00000165 0.12749 0.30937 1063 2373 0
cg00000236 0.86289 0.88644 4067 521 0
cg00000289 0.46728 0.58747 1172 823 0
cg00000292 0.9219 0.92793 7867 611 0
cg00000321 0.47355 0.62489 3510 2107 0
cg00000363 0.43024 0.62872 7092 4188 0
cg00000622 0.030028 0.057895 462 7518 0
cg00000658 0.86652 0.87237 5769 844 0
cg00000714 0.25413 0.46119 7563 8836 0
cg00000721 0.8735 0.88062 5466 741 0
cg00000734 0.06026 0.20534 861 3332 0
cg00000769 0.022377 0.04828 529 10428 0
cg00000807 0.83895 0.88308 13104 1735 0
cg00000884 0.36462 0.56352 4764 3690 0
cg00000905 0.046429 0.17574 762 3574 0
cg00000924 0.42027 0.62413 7924 4772 0
cg00000948 0.71685 0.81882 10657 2358 0

Total number of rows: 485577

Table truncated, full table size 18689 Kbytes.




Supplementary file Size Download File type/resource
GSM1185591_6285625091_R04C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1185591_6285625091_R04C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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