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Sample GSM1185590 Query DataSets for GSM1185590
Status Public on Aug 07, 2013
Title 9.1 CD34
Sample type genomic
 
Source name Bone marrow cells
Organism Homo sapiens
Characteristics cell type: CD34+CD38- cells
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy5 and Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Normal human bone marrow cells
Data processing Background corrected against out-of-band signals and dye bias corrected against Illumina internal controls
 
Submission date Jul 12, 2013
Last update date Jan 27, 2014
Contact name Peter W. Laird
Organization name USC/Norris Cancer Center
Department USC Epigenome Center
Lab Laird
Street address 1450 Biggy St.
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE49618 Sorted normal bone marrow cells from healthy volunteers at Washington University

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the methylated probe intensity
UNMETHYLATED the unmethylated probe intensity
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.54902 0.60383 2300 1509 0
cg00000108 0.96566 0.95094 10525 543 0
cg00000109 0.94425 0.93834 4474 294 0
cg00000165 0.11985 0.24115 838 2637 0
cg00000236 0.92035 0.90941 3363 335 0
cg00000289 0.49503 0.57068 763 574 0
cg00000292 0.90204 0.88166 6541 878 0
cg00000321 0.22772 0.32165 2358 4973 0
cg00000363 0.39353 0.48459 6179 6572 0
cg00000622 0.015028 0.025174 289 11191 0
cg00000658 0.89634 0.8776 6575 917 0
cg00000714 0.1966 0.27193 5170 13842 0
cg00000721 0.9443 0.92976 5070 383 0
cg00000734 0.042825 0.099893 933 8407 0
cg00000769 0.021301 0.044736 433 9246 0
cg00000807 0.86694 0.88039 13426 1824 0
cg00000884 0.92816 0.90699 4349 446 0
cg00000905 0.042789 0.11657 574 4350 0
cg00000924 0.41436 0.50486 7216 7077 0
cg00000948 0.91778 0.9045 9329 985 0

Total number of rows: 485577

Table truncated, full table size 18519 Kbytes.




Supplementary file Size Download File type/resource
GSM1185590_6285625091_R03C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1185590_6285625091_R03C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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