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Sample GSM1185589 Query DataSets for GSM1185589
Status Public on Aug 07, 2013
Title 8.24 PMN
Sample type genomic
 
Source name Bone marrow cells
Organism Homo sapiens
Characteristics cell type: Polymorphonuclear granulocytes
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy5 and Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Normal human bone marrow cells
Data processing Background corrected against out-of-band signals and dye bias corrected against Illumina internal controls
 
Submission date Jul 12, 2013
Last update date Aug 08, 2013
Contact name Peter W. Laird
Organization name USC/Norris Cancer Center
Department USC Epigenome Center
Lab Laird
Street address 1450 Biggy St.
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE49618 Sorted normal bone marrow cells from healthy volunteers at Washington University

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the methylated probe intensity
UNMETHYLATED the unmethylated probe intensity
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.32635 0.42405 1245 1691 0
cg00000108 0.96274 0.94858 8911 483 0
cg00000109 0.92361 0.9039 3866 411 0
cg00000165 0.12201 0.2384 673 2150 0
cg00000236 0.70191 0.7036 2324 979 0
cg00000289 0.55616 0.60526 782 510 0
cg00000292 0.84635 0.85273 7834 1353 0
cg00000321 0.22849 0.31392 2264 4948 0
cg00000363 0.34378 0.42903 4712 6271 0
cg00000622 0.014359 0.021795 248 11131 0
cg00000658 0.89414 0.87407 5636 812 0
cg00000714 0.15019 0.2132 3330 12289 0
cg00000721 0.94178 0.92627 4849 386 0
cg00000734 0.044625 0.097061 842 7833 0
cg00000769 0.02344 0.046974 409 8298 0
cg00000807 0.82936 0.85109 11568 2024 0
cg00000884 0.92431 0.90306 4071 437 0
cg00000905 0.044896 0.11366 476 3712 0
cg00000924 0.41172 0.49631 6923 7026 0
cg00000948 0.89092 0.88701 8855 1128 0

Total number of rows: 485577

Table truncated, full table size 18473 Kbytes.




Supplementary file Size Download File type/resource
GSM1185589_6285625091_R02C02_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1185589_6285625091_R02C02_Red.idat.gz 4.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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