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Sample GSM1185587 Query DataSets for GSM1185587
Status Public on Aug 07, 2013
Title 8.24 CD3
Sample type genomic
 
Source name Bone marrow cells
Organism Homo sapiens
Characteristics cell type: CD3+ T cells
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy5 and Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Normal human bone marrow cells
Data processing Background corrected against out-of-band signals and dye bias corrected against Illumina internal controls
 
Submission date Jul 12, 2013
Last update date Aug 08, 2013
Contact name Peter W. Laird
Organization name USC/Norris Cancer Center
Department USC Epigenome Center
Lab Laird
Street address 1450 Biggy St.
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE49618 Sorted normal bone marrow cells from healthy volunteers at Washington University

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the methylated probe intensity
UNMETHYLATED the unmethylated probe intensity
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.83767 0.81377 3050 698 0
cg00000108 0.93628 0.92828 12762 986 0
cg00000109 0.94316 0.92419 6120 502 0
cg00000165 0.174 0.31639 1351 2919 0
cg00000236 0.916 0.8942 4099 485 0
cg00000289 0.66496 0.71805 1146 450 0
cg00000292 0.88158 0.88981 11015 1364 0
cg00000321 0.31443 0.42958 4438 5893 0
cg00000363 0.39095 0.50353 7770 7661 0
cg00000622 0.012136 0.022512 299 12983 0
cg00000658 0.90699 0.89086 7036 862 0
cg00000714 0.31297 0.42128 10136 13924 0
cg00000721 0.9205 0.89887 6346 714 0
cg00000734 0.053572 0.12588 1300 9027 0
cg00000769 0.0216 0.052208 642 11655 0
cg00000807 0.76873 0.82366 16535 3540 0
cg00000884 0.93681 0.91602 5803 532 0
cg00000905 0.050258 0.15294 793 4392 0
cg00000924 0.45314 0.56298 9324 7238 0
cg00000948 0.92812 0.92167 12155 1033 0

Total number of rows: 485577

Table truncated, full table size 18578 Kbytes.




Supplementary file Size Download File type/resource
GSM1185587_6285625091_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1185587_6285625091_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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