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Sample GSM1185586 Query DataSets for GSM1185586
Status Public on Aug 07, 2013
Title 8.24 CD34
Sample type genomic
 
Source name Bone marrow cells
Organism Homo sapiens
Characteristics cell type: CD34+CD38- cells
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy5 and Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Normal human bone marrow cells
Data processing Background corrected against out-of-band signals and dye bias corrected against Illumina internal controls
 
Submission date Jul 12, 2013
Last update date Aug 08, 2013
Contact name Peter W. Laird
Organization name USC/Norris Cancer Center
Department USC Epigenome Center
Lab Laird
Street address 1450 Biggy St.
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE49618 Sorted normal bone marrow cells from healthy volunteers at Washington University

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the methylated probe intensity
UNMETHYLATED the unmethylated probe intensity
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.62398 0.68082 2165 1015 0
cg00000108 0.90626 0.91391 12792 1205 0
cg00000109 0.91851 0.90992 5869 581 0
cg00000165 0.12126 0.29692 1052 2491 0
cg00000236 0.86541 0.85815 4495 743 0
cg00000289 0.49693 0.625 1050 630 0
cg00000292 0.84841 0.87918 11563 1589 0
cg00000321 0.24864 0.3959 4094 6247 0
cg00000363 0.33574 0.48667 7829 8258 0
cg00000622 0.016452 0.032278 410 12292 0
cg00000658 0.86424 0.87458 8012 1149 0
cg00000714 0.18588 0.30986 6357 14159 0
cg00000721 0.93014 0.92126 6973 596 0
cg00000734 0.049485 0.1502 1131 6399 0
cg00000769 0.01965 0.044914 601 12780 0
cg00000807 0.77956 0.85053 19012 3341 0
cg00000884 0.91204 0.90232 5986 648 0
cg00000905 0.030735 0.1144 626 4846 0
cg00000924 0.40465 0.55548 9591 7675 0
cg00000948 0.92932 0.92952 13927 1056 0

Total number of rows: 485577

Table truncated, full table size 18630 Kbytes.




Supplementary file Size Download File type/resource
GSM1185586_6285625091_R05C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1185586_6285625091_R05C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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