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Sample GSM1185585 Query DataSets for GSM1185585
Status Public on Aug 07, 2013
Title 8.10 PMN
Sample type genomic
 
Source name Bone marrow cells
Organism Homo sapiens
Characteristics cell type: Polymorphonuclear granulocytes
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy5 and Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Normal human bone marrow cells
Data processing Background corrected against out-of-band signals and dye bias corrected against Illumina internal controls
 
Submission date Jul 12, 2013
Last update date Aug 08, 2013
Contact name Peter W. Laird
Organization name USC/Norris Cancer Center
Department USC Epigenome Center
Lab Laird
Street address 1450 Biggy St.
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE49618 Sorted normal bone marrow cells from healthy volunteers at Washington University

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the methylated probe intensity
UNMETHYLATED the unmethylated probe intensity
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.45008 0.56913 2581 1954 0
cg00000108 0.95996 0.95076 13633 706 0
cg00000109 0.94301 0.9336 6397 455 0
cg00000165 0.13162 0.27936 1249 3222 0
cg00000236 0.66603 0.73093 4504 1658 0
cg00000289 0.68337 0.74127 1338 467 0
cg00000292 0.85982 0.88346 12235 1614 0
cg00000321 0.27594 0.40245 4109 6101 0
cg00000363 0.34795 0.47337 7511 8356 0
cg00000622 0.014708 0.026645 341 12457 0
cg00000658 0.92749 0.91575 8283 762 0
cg00000714 0.13558 0.22379 4323 14994 0
cg00000721 0.95845 0.95241 8025 401 0
cg00000734 0.046173 0.11853 1289 9586 0
cg00000769 0.028092 0.061425 786 12010 0
cg00000807 0.85257 0.886 16849 2168 0
cg00000884 0.94228 0.93282 6318 455 0
cg00000905 0.047004 0.1441 881 5233 0
cg00000924 0.43145 0.55549 9696 7759 0
cg00000948 0.91292 0.91613 12584 1152 0

Total number of rows: 485577

Table truncated, full table size 18632 Kbytes.




Supplementary file Size Download File type/resource
GSM1185585_6285625091_R04C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1185585_6285625091_R04C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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