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Sample GSM1185583 Query DataSets for GSM1185583
Status Public on Aug 07, 2013
Title 8.10 CD3
Sample type genomic
 
Source name Bone marrow cells
Organism Homo sapiens
Characteristics cell type: CD3+ T cells
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy5 and Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Normal human bone marrow cells
Data processing Background corrected against out-of-band signals and dye bias corrected against Illumina internal controls
 
Submission date Jul 12, 2013
Last update date Aug 08, 2013
Contact name Peter W. Laird
Organization name USC/Norris Cancer Center
Department USC Epigenome Center
Lab Laird
Street address 1450 Biggy St.
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE49618 Sorted normal bone marrow cells from healthy volunteers at Washington University

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the methylated probe intensity
UNMETHYLATED the unmethylated probe intensity
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.79199 0.78375 2874 793 0
cg00000108 0.96766 0.95785 11295 497 0
cg00000109 0.94402 0.93485 5108 356 0
cg00000165 0.25557 0.36979 1491 2541 0
cg00000236 0.9402 0.92758 5213 407 0
cg00000289 0.69642 0.71589 1149 456 0
cg00000292 0.90871 0.90848 10363 1044 0
cg00000321 0.31874 0.41967 3879 5364 0
cg00000363 0.45515 0.55335 7836 6325 0
cg00000622 0.014782 0.02306 258 10930 0
cg00000658 0.91706 0.90277 6722 724 0
cg00000714 0.26858 0.36101 6960 12319 0
cg00000721 0.94316 0.92807 7058 547 0
cg00000734 0.04001 0.096106 817 7684 0
cg00000769 0.024506 0.047517 486 9742 0
cg00000807 0.76369 0.81351 12956 2970 0
cg00000884 0.94354 0.93159 5461 401 0
cg00000905 0.060734 0.14043 784 4799 0
cg00000924 0.42969 0.52915 7688 6841 0
cg00000948 0.92194 0.91526 9580 887 0

Total number of rows: 485577

Table truncated, full table size 18507 Kbytes.




Supplementary file Size Download File type/resource
GSM1185583_6285625091_R02C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1185583_6285625091_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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