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Sample GSM1174403 Query DataSets for GSM1174403
Status Public on May 30, 2014
Title case poor response 11002
Sample type genomic
 
Source name PBMC
Organism Homo sapiens
Characteristics gender: Male
vaccine response: poor
tissue: blood
sample type: case
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was purified using the Dneasy Blood and Tissue kit followed by bisufite conversion using the ES DNA methylation kit following manufacturer's protocols.
Label Cy5 and Cy3
Label protocol Illumina HumanMethylation450 BeadChip Protocol
 
Hybridization protocol Illumina HumanMethylation450 BeadChip Protocol
Scan protocol Arrays were imaged using Illumina iScan on a two-color channel
Data processing background corrected and normalized average beta; the normalization was done by GenomeStudio using control normalization
AVG.BETA: methylaiton level signal intensities; Detection.Pval: detection p-value
 
Submission date Jun 26, 2013
Last update date May 30, 2014
Contact name Weili Yan
E-mail(s) yanwl@fudan.edu.cn
Organization name Department of Clinical Epidemiology, Children's Hospital of Fudan University
Street address 399 Wanyuan Road
City Shanghai
ZIP/Postal code 201102
Country China
 
Platform ID GPL13534
Series (1)
GSE48300 Human DNA methylation profiles for the HBV vaccine responses study

Data table header descriptions
ID_REF
VALUE average beta
11002.Detection Pval

Data table
ID_REF VALUE 11002.Detection Pval
cg00000029 0.5606822 0
cg00000108 0.9384642 0
cg00000109 0.898347 0
cg00000165 0.1694683 0
cg00000236 0.7333664 0
cg00000289 0.7523623 0
cg00000292 0.8350171 0
cg00000321 0.2473996 0
cg00000363 0.3316662 0
cg00000622 0.01242256 0
cg00000658 0.7583144 0
cg00000714 0.2206342 0
cg00000721 0.9157575 0
cg00000734 0.08725796 0
cg00000769 0.07668954 0
cg00000807 0.8229728 0
cg00000884 0.8703284 0
cg00000905 0.07821587 0
cg00000924 0.4670593 0
cg00000948 0.8799227 0

Total number of rows: 485577

Table truncated, full table size 11018 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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